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Section: Software
Parallel softwares
Participants : Dominique Lavenier [contact] , Charles Deltel, Erwan Drezen, Guillaume Chapuis, Guillaume Rizk.
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PLAST: intensive bank sequence comparison. PLAST is a parallel version of BLAST-like software targetting multiple parallel hardware such as FPGA accelerator or GPU boards.
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SLICEE (Service Layer for Intensive Computation Execution Environment) is part of the BioWIC project. This software proposes (1) to abstract the calls to the cluster scheduler by handling command submission; (2) to take care of exploiting the data parallelism with data specific methods; (3) to manage data using a cache references mecanism and route data between tasks. [Web site: http://vapor.gforge.inria.fr/]
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QTL-map is a GPU parallel version of the QTLMap Software developed in cooperation with INRA http://www.inra.fr/qtlmap